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function [waveVamp, waveVlat] = exp_roenne2012(varargin)
%EXP_ROENNE2012 Figures from Rønne et al. (2012)
% Usage: output = exp_roenne2012(flag)
%
% `exp_roenne2012(flag)` reproduces the results for the figure given
% by flag from the Rønne et al. (2012) paper. Outputs are the ABR wave V
% amplitude and latency of all datapoints in that given figure.
%
% The following flags can be specified;
%
% 'plot' Plot the specified figure from Rønne et al. (2012). This is
% the default.
%
% 'noplot' Don't plot, only return data.
%
% 'plot2' Plot extra figures for all individual simulated points.
% Note that this creates lots of extra figures (3 for each
% simulated data point)
%
% 'auto ' Redo the experiment if a cached dataset does not exist. This is the default.
%
% 'refresh' Always recalculate the experiment.
%
% 'cached' Always use the cached version. This throws an error if the
% file does not exist.
%
% 'fig5' Plot Fig. 5 (Rønne et al., 2012). Latency of simulated ABR
% wave V's compared to Neely et al. (1988) and Harte et al.
% (2009) reference data.
%
% 'fig6' Plot Fig. 6 (Rønne et al., 2012). Amplitude of simulated
% wave V compared to Elberling et al. (2010) reference data.
%
% 'fig7' Plot Fig. 7 (Rønne et al., 2012). Latency of simulated wave
% V compared to Elberling et al. (2010) reference data.
%
% Examples:
% ---------
%
% To display Figure 5 use :::
%
% exp_roenne2012('fig5');
%
% To display Figure 6 use :::
%
% exp_roenne2012('fig6');
%
% To display Figure 7 use :::
%
% exp_roenne2012('fig7');
%
% References: roenne2012modeling elberling2010evaluating neely1988latency harte2009comparison
%
% ---------
%
% Please cite Rønne et al. (2012) and Zilany and Bruce (2007) if you use
% this model.
%
definput.import={'amtredofile'};
definput.flags.type={'fig5','fig6','fig7'};
definput.flags.plot={'plot','noplot'};
[flags,keyvals] = ltfatarghelper({},definput,varargin);
save_format='-v6';
%% ------ FIG 5 -----------------------------------------------------------
if flags.do_fig5
s = [mfilename('fullpath'),'_fig5.mat'];
waveVamp = 0;
stim_level = 40:10:100; % Default stimulus levels
if amtredofile(s,flags.redomode);
[click_amplitude, click_latency] = roenne2012click(stim_level);
waveVlat = roenne2012tonebursts(stim_level);
save(s,'waveVlat','click_latency',save_format);
else
s = load(s);
waveVlat = s.waveVlat;
click_latency = s.click_latency;
end;
if flags.do_plot;
plotroenne2012tonebursts(waveVlat,click_latency);
end ;
end;
%% ------ FIG 6 -----------------------------------------------------------
if flags.do_fig6;
stim_level = (20:20:60)+35.2;
% Default chirp numbers. 1 = click, 2 to 6 = chirp 1 to 5.
chirp_number = 1:6;
s = [mfilename('fullpath'),'_fig6.mat'];
if amtredofile(s,flags.redomode)
[waveVamp, waveVlat] = roenne2012chirp(stim_level, chirp_number);
save(s,'waveVamp','waveVlat',save_format);
else
s = load(s);
waveVamp = s.waveVamp;
waveVlat = s.waveVlat;
end;
if flags.do_plot
plotroenne2012chirp(waveVamp, waveVlat,'amponly');
end
end;
%% ------ FIG 7 -----------------------------------------------------------
if flags.do_fig7;
stim_level = (20:20:60)+35.2;
% Default chirp numbers. 1 = click, 2 to 6 = chirp 1 to 5.
chirp_number = 1:6;
s = [mfilename('fullpath'),'_fig7.mat'];
if amtredofile(s,flags.redomode)
[waveVamp, waveVlat] = roenne2012chirp(stim_level, chirp_number);
save(s,'waveVamp','waveVlat',save_format);
else
s = load(s);
waveVamp = s.waveVamp;
waveVlat = s.waveVlat;
end;
if flags.do_plot
plotroenne2012chirp(waveVamp, waveVlat,'latonly');
end
end;